PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501293.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 298aa    MW: 33021.2 Da    PI: 10.5592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
   XP_016501293.1  5 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.318158IPR017930Myb domain
SuperFamilySSF466895.81E-16270IPR009057Homeodomain-like
SMARTSM007175.7E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-15456IPR009057Homeodomain-like
PfamPF002491.6E-9555IPR001005SANT/Myb domain
CDDcd116602.86E-19656No hitNo description
SuperFamilySSF467851.69E-17118197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.2E-16118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-15119189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.798120188IPR005818Linker histone H1/H5, domain H15
PfamPF005388.8E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV RKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKRMNQTR KQDEKSLAVT IEAQSDEEIV EARLAITSSG SPQIGGSKRS  120
IIRLDNLIME AISNLKEPGG SNKTTIATYI EDQYWAPPNF KRLLSAKLKY LTATGRLIKV  180
KRKYRIAPMS ALSDRRRMPS IPLLESGQMI SNRVDMNMRT TKAQVDLELA MMRSMTLQEA  240
AAAAAQAVAE AEAAIEEAEE AARVAEAAEA EAEAAQAFAK AAMKTLQGRS FRRMMIRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331351e-63AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBankHG9754401e-63HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-63HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501292.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016501293.10.0PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-102TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1CF221e-147M1CF22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661341e-146(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-99telomere repeat binding factor 1